##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index16_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18983132	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.909984137496384	33.0	31.0	34.0	30.0	34.0
2	32.03552664544502	33.0	31.0	34.0	30.0	34.0
3	32.103688263875526	34.0	31.0	34.0	30.0	34.0
4	35.627918354041896	37.0	35.0	37.0	33.0	37.0
5	35.58782112456469	37.0	35.0	37.0	33.0	37.0
6	35.559964604365604	37.0	35.0	37.0	33.0	37.0
7	35.57875333743662	37.0	35.0	37.0	33.0	37.0
8	35.56442640761282	37.0	35.0	37.0	33.0	37.0
9	37.22460445410167	39.0	37.0	39.0	33.0	39.0
10-14	37.40511611045006	39.2	37.2	39.4	33.0	39.4
15-19	38.316475215997016	40.0	38.0	41.0	33.0	41.0
20-24	38.12124630435062	40.0	38.0	41.0	33.0	41.0
25-29	37.8010024794644	40.0	37.2	41.0	32.2	41.0
30-34	37.593096565940755	39.8	37.0	41.0	31.8	41.0
35-39	37.55788839270569	40.0	37.0	41.0	31.4	41.0
40-44	37.23542357499279	39.2	36.0	41.0	31.0	41.0
45-49	36.77877802250966	39.0	35.0	40.6	30.0	41.0
50-54	36.45735524569918	38.8	35.0	40.0	30.0	41.0
55-59	36.17215999973028	38.0	35.0	40.0	29.8	41.0
60-64	35.36674224253405	36.8	34.0	40.0	28.4	41.0
65-69	34.49053691456184	35.6	33.4	39.0	27.6	41.0
70-74	33.58011766446127	35.0	33.0	37.8	26.2	39.8
75-79	32.614736251109676	35.0	32.0	36.2	25.6	38.8
80-84	31.64275691703561	34.6	31.4	35.2	24.0	37.0
85-89	30.52229993448921	34.0	31.0	35.0	16.6	36.0
90	29.576056838249873	34.0	30.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	228.0
11	2136.0
12	6774.0
13	13236.0
14	21367.0
15	29340.0
16	36979.0
17	42895.0
18	49795.0
19	57752.0
20	67587.0
21	79055.0
22	91819.0
23	108606.0
24	130059.0
25	156091.0
26	187769.0
27	227151.0
28	274832.0
29	334858.0
30	409940.0
31	509488.0
32	640063.0
33	830045.0
34	1127012.0
35	1622076.0
36	2459407.0
37	3483793.0
38	3833451.0
39	2101338.0
40	48189.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.38533683482789	12.025360198728007	9.713444546453136	52.875858419990976
2	21.84814909137002	18.8094324169607	35.77685964084695	23.565558850822335
3	25.536947710079776	21.02475555100913	22.45091375513166	30.987382983779433
4	27.664206175528665	27.40595658411291	19.007859268360285	25.92197797199814
5	29.30325180847363	29.666366846427056	21.440836254459423	19.58954509063989
6	24.33802060344919	32.492341746550665	21.783583600058204	21.38605404994194
7	21.539884146260828	18.719008345016054	37.31185964234201	22.429247866381115
8	21.54062257305843	22.007032634901005	29.14829757877601	27.30404721326455
9	21.568558757431756	20.882045555623574	31.593552280146614	25.955843406798056
10-14	24.59001818132755	26.13642200775674	24.6106017904463	24.66295802046941
15-19	24.973389440404382	25.041041021338888	25.030930057088703	24.95463948116803
20-24	24.716829047161855	25.307997740906117	25.38219623995679	24.59297697197524
25-29	24.58549534407416	25.351777387451357	25.304760647241313	24.757966621233166
30-34	24.629981670873335	25.268162510452136	25.244495743337897	24.857360075336626
35-39	24.623344196460927	25.428599699221778	25.222159077612883	24.725897026704416
40-44	24.600707750393177	25.244418908261157	25.363656715141026	24.791216626204644
45-49	24.546359612624354	25.31923132782711	25.286892955552226	24.847516103996302
50-54	24.566136219174027	25.40332107456425	25.322827697362303	24.707715008899417
55-59	24.578140102143312	25.338795311052543	25.26979291400074	24.81327167280341
60-64	24.513673220980984	25.353100334203972	25.370981579430623	24.76224486538442
65-69	24.51075430030771	25.475640490321105	25.356609000844067	24.656996208527122
70-74	24.581693634105907	25.414671447872767	25.24975679764439	24.75387812037694
75-79	24.589173882336116	25.355043029980923	25.32592112792203	24.729861959760928
80-84	24.522744441622358	25.481783342329724	25.35194156485755	24.643530651190364
85-89	24.626826351083135	25.45996179570491	25.236976802449036	24.67623505076292
90	24.339614679101125	25.582635286508683	25.470084110179503	24.607665924210696
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.26119525481886
2	45.41370794219235
3	56.52433069385921
4	53.58618414752681
5	48.89279689911352
6	45.724074653391135
7	43.96913201264194
8	48.84466978632298
9	47.52440216422981
10-14	49.25297620179696
15-19	49.92802892157241
20-24	49.30980601913709
25-29	49.34346196530733
30-34	49.487341746209964
35-39	49.34924122316534
40-44	49.39192437659782
45-49	49.393875716620656
50-54	49.27385122807345
55-59	49.39141177494672
60-64	49.27591808636541
65-69	49.16775050883483
70-74	49.33557175448284
75-79	49.319035842097044
80-84	49.166275092812725
85-89	49.30306140184605
90	48.94728060331182
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	79.0
1	41.0
2	5.0
3	7.5
4	11.5
5	10.5
6	7.5
7	18.0
8	36.0
9	63.5
10	82.0
11	91.0
12	143.0
13	229.0
14	357.0
15	603.0
16	1071.0
17	1892.0
18	3312.0
19	5838.0
20	7458.0
21	10310.0
22	17508.5
23	27801.0
24	41853.5
25	60336.5
26	83809.5
27	113260.0
28	144433.0
29	177207.5
30	195163.0
31	212729.5
32	249044.0
33	289513.5
34	332953.0
35	374218.5
36	417805.0
37	467074.0
38	508954.5
39	544472.5
40	563340.0
41	574751.5
42	598660.0
43	621720.5
44	637962.5
45	646982.0
46	648694.5
47	645306.5
48	644729.5
49	645969.5
50	646027.0
51	638371.5
52	630563.0
53	621653.0
54	616501.0
55	616241.5
56	605127.5
57	590526.0
58	572635.5
59	548810.5
60	535524.0
61	521318.0
62	493070.0
63	456735.0
64	410490.5
65	365314.0
66	320758.0
67	274298.0
68	230802.0
69	189398.0
70	168361.0
71	149906.5
72	116217.5
73	88285.0
74	63913.0
75	43712.0
76	29033.0
77	17959.0
78	10051.0
79	5170.0
80	3275.0
81	2420.5
82	1121.0
83	486.5
84	207.0
85	85.5
86	42.0
87	23.0
88	15.5
89	11.0
90	7.0
91	7.0
92	4.5
93	2.5
94	3.0
95	3.0
96	1.5
97	0.5
98	0.5
99	0.5
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008944783189623292
3	0.044876683152179526
4	0.04459222008254486
5	0.04440257803612175
6	0.008691927127725815
7	0.014860561471099711
8	0.011562896997186767
9	0.00744871815672988
10-14	0.01058729402503233
15-19	0.009257692566221422
20-24	0.01277239182659637
25-29	0.0050402641671564
30-34	0.010987649456370003
35-39	0.006878738450535981
40-44	0.0020776339752576127
45-49	5.847296431379184E-4
50-54	0.0010735846961397097
55-59	0.0016498858038810453
60-64	6.005331470065108E-4
65-69	0.007544592746866007
70-74	0.0030848439551492343
75-79	0.004506105736397977
80-84	0.0017689388663577749
85-89	0.001265333876411964
90	0.012816641637428428
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8983132E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.27642432380588
#Duplication Level	Relative count
1	100.0
2	30.751939894075626
3	16.020035308124974
4	9.8185326600156
5	6.713675740033666
6	4.811758426735641
7	3.7750954551053084
8	3.0145338095824608
9	2.408958410313257
10++	27.965266658455477
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	4899415	3.004507	4.8179407	2
CCAGG	3947720	2.5416558	5.226703	1
AAGAA	4049110	2.5372975	5.0183167	2
CTTCT	4161030	2.520584	5.6310806	1
CCTGG	3921585	2.5099432	6.0135517	1
CTGGA	3760120	2.4000268	8.784693	1
CTGCT	3749660	2.334765	5.1635966	1
TCCAG	3699925	2.3174605	5.6721716	2
CTCCT	3731800	2.2802093	7.865151	1
CTGGG	3450625	2.2505825	8.454441	1
CAGGA	3437585	2.2071707	5.372061	1
CTTCA	3600105	2.1937327	5.831443	1
CTCCA	3510615	2.1577828	8.337727	1
CCCAG	3410065	2.1544585	7.3889933	1
CAGAA	3325965	2.089861	5.1748085	1
CTCTG	3225010	2.0080862	6.405281	1
CTGCA	3134310	1.9631857	5.012091	1
CTGGC	2922295	1.8703648	5.4984508	1
TGGAA	2903815	1.8483977	5.133552	2
CTGAA	2955010	1.845825	5.5967684	1
CTCAG	2762610	1.7303702	6.3796864	1
CTTTG	2747845	1.6962407	5.102403	1
CTTGG	2584160	1.6397047	5.4453707	1
CTGGT	2581655	1.6381152	5.1145706	1
CTCCC	2499260	1.5403657	5.0220113	1
>>END_MODULE
